taxdiv - Taxonomic Diversity Indices Using Deng Entropy
Calculates taxonomic diversity indices for ecological
community data using Deng entropy framework and classical
approaches (Shannon, Simpson, Clarke & Warwick). Provides
functions for computing taxonomic distinctness, average
taxonomic distinctness (AvTD/Delta+), variation in taxonomic
distinctness (VarTD/Lambda+), and Deng entropy-based measures
that incorporate taxonomic hierarchy information. Includes
tools for constructing taxonomic trees and computing pairwise
taxonomic distances. Methods are described in Ozkan (2018)
<doi:10.18182/tjf.441061>, Clarke & Warwick (1998)
<doi:10.1046/j.1365-2664.1998.3540523.x>, Ozkan & Mert (2022)
<doi:10.5152/forestist.2021.21025>, Shannon (1948)
<doi:10.1002/j.1538-7305.1948.tb01338.x>, and Simpson (1949)
<doi:10.1038/163688a0>.