Package: taxdiv
Title: Taxonomic Diversity Indices Using Deng Entropy
Version: 1.0.0
Authors@R: c(
    person("Muhammet Murat", "Gorgoz", , "muratgorgoz350@gmail.com", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-6398-0005")),
    person("Kursad", "Ozkan", role = "aut",
           comment = c(ORCID = "0000-0002-8526-7243")),
    person("Mehmet Guvenc", "Negiz", role = c("aut", "ths"),
           comment = c(ORCID = "0009-0008-1507-8712")),
    person("Ahmet", "Mert", role = "aut",
           comment = c(ORCID = "0000-0001-6859-0308")),
    person("Serkan", "Ozdemir", role = "aut",
           comment = c(ORCID = "0000-0002-9425-3724"))
    )
Description: Calculates taxonomic diversity indices for ecological
        community data using Deng entropy framework and classical
        approaches (Shannon, Simpson, Clarke & Warwick). Provides
        functions for computing taxonomic distinctness, average
        taxonomic distinctness (AvTD/Delta+), variation in taxonomic
        distinctness (VarTD/Lambda+), and Deng entropy-based measures
        that incorporate taxonomic hierarchy information. Includes
        tools for constructing taxonomic trees and computing pairwise
        taxonomic distances. Methods are described in Ozkan (2018)
        <doi:10.18182/tjf.441061>, Clarke & Warwick (1998)
        <doi:10.1046/j.1365-2664.1998.3540523.x>, Ozkan & Mert (2022)
        <doi:10.5152/forestist.2021.21025>, Shannon (1948)
        <doi:10.1002/j.1538-7305.1948.tb01338.x>, and Simpson (1949)
        <doi:10.1038/163688a0>.
Imports: stats, rlang
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-US
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.1.0)
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, ggplot2, shiny (>=
        1.7.0), bslib (>= 0.5.0), DT (>= 0.28), openxlsx (>= 4.2.5),
        readxl (>= 1.4.0), shinyjs (>= 2.1.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/mgorgoz/taxonomic-diversity-r,
        https://mgorgoz.github.io/taxonomic-diversity-r/
BugReports: https://github.com/mgorgoz/taxonomic-diversity-r/issues
Repository: https://mgorgoz.r-universe.dev
Date/Publication: 2026-06-10 23:03:39 UTC
RemoteUrl: https://github.com/mgorgoz/taxonomic-diversity-r
RemoteRef: HEAD
RemoteSha: 006580f6d0d0825da33e5dca175062736a889273
NeedsCompilation: no
Packaged: 2026-06-11 00:18:07 UTC; root
Author: Muhammet Murat Gorgoz [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-6398-0005>),
  Kursad Ozkan [aut] (ORCID: <https://orcid.org/0000-0002-8526-7243>),
  Mehmet Guvenc Negiz [aut, ths] (ORCID:
    <https://orcid.org/0009-0008-1507-8712>),
  Ahmet Mert [aut] (ORCID: <https://orcid.org/0000-0001-6859-0308>),
  Serkan Ozdemir [aut] (ORCID: <https://orcid.org/0000-0002-9425-3724>)
Maintainer: Muhammet Murat Gorgoz <muratgorgoz350@gmail.com>